PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21682_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 378aa    MW: 42279.7 Da    PI: 10.5043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21682_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  RrC21682_p1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                 89*******************88 PP

2zf-C2H216.23e-0583105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC++C+k +  +s+ k H +t+
  RrC21682_p1  83 YKCEKCSKKYAVQSDWKAHAKTC 105
                  9*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-8528No hitNo description
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PfamPF121715.7E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355734878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-671104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-878103No hitNo description
SMARTSM003557483103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIKKKVYIC PIKTCVHHDS  60
SRALGDLTGI KKHYSRKHGE KKYKCEKCSK KYAVQSDWKA HAKTCGTREY KCDCGTLFSR  120
AFCDALTEEG ARMSLLSNNP AISTTTMMTT SLNFANDSHV HPKWYKWPPP GTTTSSLCLR  180
HHSSLISPTT NTTNNSKFPR LPQTLISPYH HPQHHNKPQL HSHHYIRKTL LSPHSSPPPP  240
PTTNKTSLYL QSAQMGSTRS NSTTAPSLFA GPTMTSSSSA ASPPPRSSSP MMIQQQLNNN  300
FNTSVSRENH NFAPPNSGVS TSSVGNDYPF QSNRSGLNPA QQMGLTRDFL GVSNENHARQ  360
TGSRPFFPQE LPRFAPLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052401e-130AB005240.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16.
GenBankAJ6214941e-130AJ621494.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 3 (idz3 gene).
GenBankAJ6304931e-130AJ630493.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g03150.
GenBankAK2288951e-130AK228895.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL16-21-B02.
GenBankAL1630021e-130AL163002.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15A17 (ESSA project).
GenBankCP0026881e-130CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122730.11e-168PREDICTED: zinc finger protein JACKDAW isoform X2
SwissprotQ700D26e-99IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLM4CZA21e-164M4CZA2_BRARP; Uncharacterized protein
STRINGBra009549.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.15e-87C2H2-like zinc finger protein